Workshop - 11/2021
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Internship on 
“Linux, Python, Next Generation Sequencing data analysis, Machine Learning, and Network Biology"


November 19 - December 06, 2021

We will start this workshop by answering the most important question of the researchers/students e.g. How I can start learning Bioinformatics and and data analysis with Linux system ? How to shift from windows system to linux system ? Further, we will also provide you the training of Next Generation Sequencing (NGS) technologies data handling, and analysis (e.g. RNA-Seq data analysis, Whole Genome Assembly and annotations). Further, basics to advanced training of 'Python', and 'R' will also be provided. Basics of Machine Learning (ML) and application of ML in drug discovery, and demo of two tools with R, is also the part of this training. We will also provide Basics of Network Biology and use of Cytoscape tool for Network analysis. 

 

Who can participate: Students (B.Sc./B.Tech/M.Sc./M.Tech), Research Fellows (Ph.D. students), Researchers, Faculty, Scientists, and Company Personals. 

Workshop Logistics 

Last date of registration: November 17, 2021

Fee: Rs. 700/- for Indian Participants, $20 (USD) for International Participants.

Timings: 07:00 PM - 08:00 PM. Every session will be 60-90 minutes duration.

Workshop Timings (Indian Standard Time e.g. IST)

November 19, 2021 (07:00 - 08:30 PM): How to shift from Windows to Linux, and basics of linux commands

  • Start the linux system as Windows user.

  • Basics of linux system

  • Basics and advanced linux commands.

November 20, 2021: You have to Practice.

November 21, 2021 (07:00 - 08:00 PM): Quality Control of Next Generation Sequencing (NGS) datasets

  • Basics of NGS datasets, generation and Quality Score.

  • Data handling and Filtering of NGS datasets, trimming etc.

  • Training of tools to filter the NGS datasets.

November 22, 2021: You have to Practice.

 

November 23, 2021 (07:00 - 08:00 PM): Whole Genome Assembly with NGS datasets.

 

November 24, 2021: You have to Practice.

 

November 25, 2021 (07:00 - 08:00 PM): Learn 'R' programming for Bioinformatics research.

  • Basics of 'R' and 'R studio'.

  • Basic data/file handling in R.

 

November 26, 2021: You have to Practice.

 

November 27, 2021 (11:00 AM - 01:00 PM): Gene expression analysis with RNA-Seq data datasets

  • Introduction to RNA sequencing 

  • Data Preprocessing

  • Mapping and Alignment

  • Transcriptome Assembly

  • Differential Expression analysis

 

November 28, 2021 (02:00 - 04:00 PM): Basics of Machine Learning (ML) and application of ML in drug discovery, and demo with R

 

November 29, 2021: You have to Practice.

November 30, 2021 (07:00 - 08:00 PM): Basics of Python.

  • Introduction to Python and code editors.

  • Basic programming concepts.

  • Conditionals and loops.

December 01, 2021:You have to Practice.

December 02, 2021(07:00 - 08:00 PM): Advanced commands in Python.

  • File handling in Python.

  • Introduction to BioPython.

December 03, 2021: You have to Practice.

December 04, 2021 (07:00 - 08:00 PM): Biological Networks: Construction and analysis -I

  • Basics of Network Analysis

  • Network constructions

December 05, 2021 (07:00 - 08:00 PM: Biological Networks: Construction and analysis -II

  • Demo of Cytoscape tool

  • Data analysis with Cytoscape 

Prerequisite for the workshop

  • Computer/Laptop with stable internet connection, and MIC.

  • Basic knowledge of molecular biology.

Certification and other highlights

  • Participants must have access to the laptop/desktop with a stable internet connection. 

  • Participants successfully completing the training will be provided with E-certificate.

  • The entire training will be online and interactive (16-20 Hours).

  • We will provide the full recordings of all the training sessions. 

  • We will provide the link (e.g. Webex) to join the training sessions, one day before the event.

Help and Support 

support@nextgenhelper.com

Scientists for this Workshop

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Dr. Surendra Vikram

CEO- Bionomics Research Lab, India

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Dr. Manish Datt

Manish Datt

Bioinformatics Researcher and Educator, New Delhi

India

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Dr. Madhumita Bhattacharyya

Post Doc fellow at UNIKA-T, Augsburg, Bavaria, Germany.

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Dr. Shruti Kapoor

Scientist, ICMR AIIMS Computational Genomics Centre, New Delhi. 

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Dr. Shailza Singh

Scientist-E, National Centre For Cell Science (DBT-NCCS), Pune, India.

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