Workshop - 10/2021
White Sheet
Latest Events
Two weeks workshop
on 

“Basics to Advanced Bioinformatics, Genomics,
and Data Sciences"

October 13 - 31, 2021

We will start this workshop by answering the most important question of the researchers/students e.g. How I can start learning Bioinformatics and and data analysis with Linux system ? How to shift from windows system to linux system ? Further, we will also teach you the basics of 'Python', 'R', and data analysis with both the modules. In addition to this, we will also provide you the filtering and analysis of datasets generated by Next Generation Sequencing (NGS) technologies (e.g. RNA-Seq data, Whole Genome Sequencing and Whole Exome Sequencing). We will also provide Basics of Network Biology and use of Cytoscape tool for Network analysis, and a very informative training session on MD SimulationsWe will cover basics to advanced aspects of all the topics mentioned.   

 

Who can participate: Students (B.Sc./B.Tech/M.Sc./M.Tech), Research Fellows (Ph.D. fellows), Researchers, Faculty, Scientists, and Company Personals. 

Workshop Logistics 

Last date of registration: October 11, 2021

Fee: Rs. 1100/- for Indian Participants, $22 (USD) for International Participants.

Timings: 07:00 PM - 08:00 PM. Every session will be 60-90 minutes duration.

Workshop Timings (Indian Standard Time e.g. IST)

October 13, 2021 (07:00 - 08:30 PM): How to shift from Windows to Linux, and basics of linux commands.

  • Start the linux system as Windows user.

  • Basics of linux system

  • Basics and advanced linux commands.

October 14, 2021: You have to Practice.

October 15, 2021 (07:00 - 08:00 PM): Basics of Python.

  • Introduction to Python and code editors.

  • Basic programming concepts.

  • Conditionals and loops.

October 16, 2021 (07:00 - 08:00 PM): Advanced commands in Python.

  • File handling in Python.

  • Introduction to BioPython.

October 17, 2021: You have to Practice.

October 18, 2021 (07:00 - 08:00 PM): Learn 'R' programming for Bioinformatics research.

  • Installation of R.

  • Basics of 'R' and 'R studio'.

  • Basic data handling in R.

October 19, 2021 (07:00 PM - 08:00 PM): Advanced training of 'R'.

  • File handling in 'R'.

  • Data analysis in 'R'.

  • Graphs and Plots generation in 'R' for publications.

October 20, 2021: Your Practice day.

October 21, 2021 (07:00 PM - 08:00 PM): Quality Control of Next Generation Sequencing (NGS) datasets.

  • Basics of NGS datasets, generation and Quality Score.

  • Data handling and Filtering of NGS datasets, trimming etc.

  • Training of tools to filter the NGS datasets.

October 22, 2021: Your Practice day.

October 23, 2021 (02:00 PM - 04:00 PM): Molecular dynamics (MD) simulations

  • Introduction to Molecular dynamics (MD)

October 23, 2021 (06:00 PM - 08:00 PM): Gene expression analysis with RNA-Seq data datasets

  • Introduction to RNA sequencing 

  • Data Preprocessing

  • Mapping and Alignment

  • Transcriptome Assembly

  • Differential Expression analysis

October 24, 2021 (11:00 AM - 01:00 PM): Exome Sequencing data analysis

  • Biological Networks - Properties and resources.

  • Network analysis tools.

  • Cytoscape - Introduction and installation.

October 25, 2021: Your Practice day.

October 26, 2021 (07:00 PM - 08:00 PM): Whole Genome Assembly of a microbe with NGS datasets.

October 27, 2021 (07:00 PM - 08:00 PM): Whole Genome Annotation of a microbial genome.

October 28, 2021: Your Practice day.

October 30, 2021 (07:00 - 08:00 PM): Biological Networks: Construction and analysis -I.

  • Basics of Network Analysis

  • Network constructions 

October 31, 2021 (07:00 - 08:00 PM): Biological Networks: Construction and analysis -II.

  • Analysis of Biological Networks using Cytoscape.

  • Apps and plugins for Cytoscape.

Prerequisite for the workshop

  • Computer/Laptop with stable internet connection, and MIC.

  • Basic knowledge of molecular biology.

Certification and other highlights

  • Participants must have access to the laptop/desktop with a stable internet connection. 

  • Participants successfully completing the training will be provided with E-certificate.

  • The entire training will be online and interactive (16-20 Hours).

  • We will provide the full recordings of all the training sessions. 

  • We will provide the link (e.g. Webex) to join the training sessions, one day before the event.

Help and Support 

support@nextgenhelper.com

Scientists for this Workshop

Faded Sandpaper
Surendra_Vikram_edited.jpg

Dr. Surendra Vikram

CEO- Bionomics Research Lab, India

More..

Faded Sandpaper
shruti_edited.jpg

Dr. Shruti Kapoor

Scientist, ICMR AIIMS Computational Genomics Centre, New Delhi. 

More..

Faded Sandpaper
shailaza.jpeg

Dr. Shailza Singh

Scientist-E, National Centre For Cell Science (DBT-NCCS), Pune, India.

More..

Faded Sandpaper
154432470_4318766028151504_7368003552878001697_o.jpeg

Dr. Abhishek Das

Scientist, AIIMS, New Delhi

More..

Faded Sandpaper
manish_datt_pic_edited.jpg

Dr. Manish Datt

Assistant Professor

Biological and Life Sciences division, Ahmedabad University, India

More..

Faded Sandpaper
IMG_20190323_182917_edited.jpg

Dr. Madhumita Bhattacharyya

Post Doc fellow at UNIKA-T, Augsburg, Bavaria, Germany.

More..

Workshop Registration (10/2021)

After this form, please pay the fee to complete the registration process !!