In this workshop, we will provide basics to advanced training of all the tools, techniques, and methodologies used to learn the Bioinformatics, Genomics, Next Generation Sequencing (NGS) data analysis. After this workshop, participant will be perfectly ready to start Master's degree/PhD/Postdoctoral research in the areas mentioned above. This workshop will provide a platform for faculty and researchers to improve their skills by updating themselves with latest methodologies in the area. We will cover basics to advanced aspects of all the topics mentioned below. 

 

Who can participate: Students (B.Sc./B.Tech/M.Sc./M.Tech), Research Fellows (JRF/SRF/RA etc.), PhD students, Faculty, Scientists, and Company Personals. 

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Internship Logistics 

Last date of registration: January 11, 2023

Fee: Rs. 950/- for Indian Participants, $25 (USD) for International Participants.

Timings: 07:00 PM - 08:00 PM Indian Standard Time (IST). Every session will be 60 minutes duration.

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Certification and other highlights

• Participants must have access to the laptop/desktop with a stable internet connection. 

• Participants successfully completing the internship will be provided with E-certificate.

• The entire internship will be online and interactive (~60 Hours).

• We will provide the full recordings of all the internship sessions. 

• We will provide the link (e.g. Webex) to join the training sessions, 

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Help and Support 

support@nextgenhelper.com

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Workshop Timings (Indian Standard Time e.g. IST)

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January 13, 2023 (07:00 - 08:00 PM): Setup of Linux system for Bioinformatics

• Start working on Linux System

• Basic Linux commands

 

January 14, 2023 (07:00 - 08:00 PM): Basic Linux commands and file handling​

• Basic commands to play with data

• File Handeling 

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January 15, 2023 : You have to Practice, No live session.

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January 16, 2023 (07:00 - 08:00 PM): Basics of 'R'

• Basic operation with R

• Data analysis in R

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January 17, 2023 (07:00 - 08:00 PM): Advanced commands in 'R'

• File handling in R and Graph Preparation

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January 18, 2023 (07:00 - 08:00 PM): Basics of Next Generation Sequencing (NGS)

• Data generation in NGS technologies

• NGS data file handeling 

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January 19, 2023(07:00 - 08:00 PM): Quality Control of Next Generation Sequencing (NGS) datasets

• Basics of NGS datasets, generation and Quality Score.

• Data handling and Filtering of NGS datasets, trimming etc.

• Training of tools to filter the NGS datasets.

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January 20, 2023 (07:00 - 08:00 PM): NGS data analysis (Alignment & Variant Calling)- I

• SNP basics

• SNP identification using samtools

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January 21, 2023 (07:00 - 08:00 PM): NGS data analysis (Alignment & Variant Calling)- II

• SNP identification using freebayes

• Filtration and annotation of SNPs.

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January 22, 2023 : You have to Practice, No live session.

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January 23, 2023 (07:00 - 08:00 PM): Genome-Wide Association Studies (GWAS -I)

• Basics, genotype and phenotype data

• Hapmap format

• TASSEL software

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January 24, 2023 (07:00 - 08:00 PM): Genome-Wide Association Studies (GWAS - II)

• GWAS data analysis using GAPIT  R package,
• Manhattan plot
• qqplot generation.

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January 25, 2023: You have to Practice, No live session.

 

January 26, 2023 (07:00 - 08:00 PM): Differential Expression of Genes using Affy/Limma Package in R

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January 27, 2023 (07:00 - 08:00 PM): Co-expression Analysis using WGCNA package in R

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January 28-29, 2023: You have to Practice, No live session.

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January 30, 2023(07:00 - 08:00 PM): Protein Structure prediction I

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​January 31, 2023 (07:00 - 08:00 PM): Protein Structure prediction II

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Scientists/Resource persons for this internship