Workshop-08/21
Latest Events
Two weeks workshop
on 

“How to start Bioinformatics, and
data analysis for Next Generation Sequencing"

August 14- 31, 2021

We will start this workshop by answering the most important question of the researchers/students e.g. How I can start learning Bioinformatics and and data analysis with Linux system ? How to shift from windows system to linux system ? Further, we will also teach you the basics of 'Python', 'R', and data analysis with both the modules. In addition to this, we will also provide you the filtering and analysis of datasets generated by Next Generation Sequencing (NGS) technologies (e.g. RNA-Seq data, Whole Genome Sequencing, Exome Sequencing, and ChIP-Seq). Basics of Network Biology and use of Cytoscape tool for Network analysis, and a very informative training session on Protein-ligand docking by using  Auto doc vina, and Ligplus, will also be provided. We will cover basics to advanced aspects of all the topics mentioned.   

 

Who can participate: Students (B.Sc./B.Tech/M.Sc./M.Tech), Research Fellows (Ph.D. fellows), Researchers, Faculty, Scientists, and Company Personals. 

Workshop Logistics 

Last date of registration: August 12, 2021

Fee: Rs. 1000/- for Indian Participants, $20 (USD) for International Participants.

TimingsSaturdays and Sundays (10:00 AM and 2:30 PM) and Weekdays (7:00 PM). Every session will be 60-90 minutes duration.

Workshop Timings (Indian Standard Time e.g. IST)

August 14, 2021 (07:00 - 08:30 PM): How to shift from Windows to Linux, and basics of linux commands.

  • Start the linux system as Windows user.

  • Basics of linux system

  • Basics and advanced linux commands.

August 15, 2021 (07:00 - 08:00 PM): Basics of Python.

  • Introduction to Python and code editors.

  • Basic programming concepts.

  • Conditionals and loops.

August 16, 2021 (07:00 - 08:00 PM): Advanced commands in Python.

  • File handling in Python.

  • Introduction to BioPython.

August 17, 2021 (07:00 - 08:00 PM): Learn 'R' programming for Bioinformatics research.

  • Installation of R.

  • Basics of 'R' and 'R studio'.

  • Basic data handling in R.

August 18, 2021 (07:00 PM - 08:00 PM): Advanced training of 'R'.

  • File handling in 'R'.

  • Data analysis in 'R'.

  • Graphs and Plots generation in 'R' for publications.

August 19, 2021: Your Practice day.

August 20, 2021 (07:00 PM - 08:00 PM): Quality Control of Next Generation Sequencing (NGS) datasets.

  • Basics of NGS datasets, generation and Quality Score.

  • Data handling and Filtering of NGS datasets, trimming etc.

  • Training of tools to filter the NGS datasets.

August 21, 2021 (07:00 PM - 08:00 PM): Gene expression analysis with RNA-Seq data datasets-I.

  • Introduction to RNA sequencing 

  • Data Preprocessing

August 22, 2021 (07:00 PM - 08:00 PM): Gene expression analysis with RNA-Seq data datasets-II.

  • Mapping and Alignment

  • Transcriptome Assembly

  • Differential Expression analysis

August 23, 2021: Your Practice day.

August 24, 2021 (07:00 - 08:00 PM): Biological Networks: Construction and analysis -I.

  • Biological Networks - Properties and resources.

  • Network analysis tools.

  • Cytoscape - Introduction and installation.

August 25, 2021 (07:00 - 08:00 PM): Biological Networks: Construction and analysis -II.

  • Analysis of Biological Networks using Cytoscape.

  • Apps and plugins for Cytoscape.

August 26, 2021: Your Practice day.

August 27, 2021 (07:00 PM - 08:00 PM): Metagenomics data analysis -I

  • Basics of Metagenome.

  • Metagenome sequencing data handeling and analysis.

August 28, 2021 (07:00 PM - 08:00 PM): Metagenomics data analysis -II

  • ​Data interpretation of Metagenomics

  • Results and Outputs of analysis

 

August 29, 2021: Your Practice day.

August 30, 2021 (07:00 PM - 08:00 PM): ChIP-Seq data analysis -I

  • Introduction to ChIP-Seq

  • Data Preprocessing for ChIP-Seq

August 31, 2021 (07:00 PM - 08:00 PM): ChIP-Seq data analysis -II

  • Mapping and Alignment

  • Peak Calling and further data interpretation 

Prerequisite for the workshop

  • Computer/Laptop with stable internet connection, and MIC.

  • Basic knowledge of molecular biology.

Certification and other highlights

  • Participants must have access to the laptop/desktop with a stable internet connection. 

  • Participants successfully completing the training will be provided with E-certificate.

  • The entire training will be online and interactive (16-20 Hours).

  • We will provide the full recordings of all the training sessions. 

  • We will provide the link (e.g. Webex) to join the training sessions, one day before the event.

Help and Support 

support@nextgenhelper.com

Scientists for this Workshop

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Dr. Surendra Vikram

CEO- Bionomics Research Lab, India

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Dr. Shruti Kapoor

Scientist, ICMR AIIMS Computational Genomics Centre, New Delhi. 

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Dr. Ridhi Goel

Bioinformatics Scientist, Clevergene, Bengaluru, Karnataka, India.

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Dr. Firoz Ahmad

Assistant Professor of Bioinformatics and Systems Biology, University of Jeddah, Saudi Arabia.

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Dr. Manish Datt

Assistant Professor

Biological and Life Sciences division, Ahmedabad University, India

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Dr. Madhumita Bhattacharyya

Post Doc fellow at UNIKA-T, Augsburg, Bavaria, Germany.

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Payment Options