Workshop - 08/2022

This workshop is designed to provide hands-on training of different modules of Basic Bioinformatics (Linux System, Python & R), Genomics, Network Biology, Next Generation Sequencing (NGS) data processing data analysis; and Genome Assembly and annotations & Gene Expression Analysis with NGS datasets. This event is specially designed for the beginners in the field, and very useful for the students ans researchers already working in the field.  

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Who can participate: Students (B.Sc./B.Tech/M.Sc./M.Tech/MBBS), Research Fellows (Ph.D. students), Researchers (JRF/SRF/RA), Faculty, Scientists, and Company Personals. 

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Workshop Logistics 

Last date of registration: August 11, 2022

Fee: Rs. 850/- for Indian Participants, $20 (USD) for International Participants.

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Prerequisite for the workshop

• Computer/Laptop with stable internet connection, and MIC.

• Basic knowledge of molecular biology.

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Certification and other highlights

• Participants must have access to the laptop/desktop with a stable internet connection. 

• Participants successfully completing the training will be provided with E-certificate.

• The entire training will be online and interactive (16-20 Hours).

• We will provide the full recordings of all the training sessions. 

• We will provide the link (e.g. Webex) to join the training sessions, one day before the event.

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Help and Support 

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support@nextgenhelper.com

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Workshop Timings (Indian Standard Time e.g. IST)

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August 13, 2022 (07:00 - 08:00 PM): Basics of Python.​

• Introduction to Python and code editors

• Basic programming concepts

• Conditionals and loops

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August 14, 2022 (07:00 - 08:00 PM): Data handling in Python.

• File handling in Python

• Coding and data handling

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August 15, 2022: You have to Practice, No live session.

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August 16, 2022 (07:00 - 08:00 PM): Learn 'R' programming for beginners ​

• Basics of 'R' and 'R studio'.

• Installation of 'R' and 'R Studio'​

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August 17, 2022 (07:00 - 08:00 PM): File and data handling in R with R-Studio

• Basic data/file handling in R.

• Graph preparation in R with R studio

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August 18, 2022: You have to Practice, No live session.

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August 19, 2022 (07:00 - 08:00 PM): How to setup your linux system to start bioinformatics work?

• Basics of Linux System

• Installation of Linux system

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August 20, 2022 (07:00 - 08:00 PM): Basic Linux commands

• Basics linux commands to perform different operations

• Handling of files/data with shell commands

August 21, 2022: You have to Practice, No live session.

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August 22, 2022 (07:00 - 08:00 PM): Quality Control of Next Generation Sequencing (NGS) datasets

• Basics of NGS datasets, generation and Quality Score.

• Data handling and Filtering of NGS datasets, trimming etc.

• Training of tools to filter the NGS datasets.

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August 23, 2022 (07:00 - 08:00 PM): Gene Whole genome assembly with NGS datasets

• Basics of Whole genome assembly

• Demonstration of whole genome assembly with short reads

• Quality assignment of whole genome assembly

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August 24, 2022 (07:00 - 08:00 PM): Whole Genome Annotations, and Gene annotations

• Gene prediction

• Whole genome annotation with PROKKA pipeline for prokaryotic genomes

• Assigning the functions to the predicted genes

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August 25, 2022 (07:00 - 08:00 PM): NGS Data analysis with Galaxy tool 

• Basics of Galaxy tool

• NGS data import/export, and analysis in GALAXY

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August 26, 2022: You have to Practice, No live session.

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August 27, 2022 (07:00 - 08:00 PM): RNA-Seq data analysis -I

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August 28, 2022 (07:00 - 08:00 PM): RNA-Seq data analysis -II

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August 29, 2022: You have to Practice, No live session.

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August 30, 2022 (07:00 - 08:00 PM): Network Biology -I

• Basics of Network Analysis

• Network constructions

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August 31, 2022 (07:00 - 08:00 PM): Network Biology -II

• Network Data analysis

• Cystoscape usages

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Scientists for this Workshop