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Workshop - 02/2023
Latest Events

International Workshop on 
Basics Bioinformatics, and Next Generation Sequencing data analysis


February 10 - 28, 2023

This workshop is designed to provide hands-on training of different modules of Basic Bioinformatics (Linux System, Python, Biopython, and R), and all type of Next Generation Sequencing (NGS) analysis including including NGS data processing, Whole Genome Assembly, Genome Alignments, Variant calling, RNA-Seq data analysis, Metagenomics data and Microbiome data analysis.

This event is specially designed for the beginners in the field, and very useful for the students ans researchers already working in the field.  

Who can participate: Students (B.Sc./B.Tech/M.Sc./M.Tech/MBBS), Research Fellows (Ph.D. students), Researchers (JRF/SRF/RA), Faculty, Scientists, and Company Personals. 

Workshop Logistics 

 

Last date of registration: February 08, 2023.

Fee: Rs. 970/- for Indian Participants, $25 (USD) for International Participants.

Prerequisite for the workshop

  • Computer/Laptop with stable internet connection, and MIC.

  • Basic knowledge of molecular biology.

Certification and other highlights

  • Participants must have access to the laptop/desktop with a stable internet connection. 

  • Participants successfully completing the training will be provided with E-certificate.

  • The entire training will be online and interactive (16-20 Hours).

  • We will provide the full recordings of all the training sessions. 

  • We will provide the link (e.g. Webex) to join the training sessions, one day before the event.

Help and Support 

support@nextgenhelper.com

Workshop Timings (Indian Standard Time e.g. IST)

February 10, 2023 (07:00 - 08:00 PM): How to setup your linux system to start bioinformatics work?

  • Basics of Linux System

  • Installation of Linux system

 

February 11, 2023 (07:00 - 08:00 PM): Basic Linux commands

  • Basics linux commands to perform different operations

  • Handling of files/data with shell commands

February 12, 2023 (07:00 - 08:00 PM): Basics of 'R'

February 13, 2023 (07:00 - 08:00 PM): File handling in 'R' and Graph preparation

February 14, 2023 (07:00 - 09:00 PM): Basics of Python

  • Introduction to Python and code editors

  • Basic programming concepts

February 15, 2023 (07:00 - 09:00 PM): Basics of Python

  • Conditionals and loops

  • File handling in Python

  • Coding and data handling

 

February 16, 2023 (07:00 - 08:00 PM): Quality Control of Next Generation Sequencing (NGS) datasets

  • Quality check of NGS datasets

  • Understanding of NGS data quality and filtering 

February 17, 2023 (07:00 - 08:00 PM): Whole Genome assembly with NGS datasets

February 18, 2023 (07:00 - 08:00 PM): Metagenomics data analysis with NGS datasets

 

February 19, 2023 (07:00 - 08:00 PM): You have to Practice, No live session

 

February 20, 2023 (07:00 - 08:00 PM): NGS data analysis (Alignment & Variant Calling)- I

  • SNP basics

  • SNP identification using samtools

 

February 21, 2023 (07:00 - 08:00 PM): NGS data analysis (Alignment & Variant Calling)- II

  • SNP identification using freebayes

  • Filtration and annotation of SNPs.

February 22, 2023 (07:00 - 08:00 PM): You have to Practice, No live session.

February 23, 2023 (07:00 - 08:00 PM): Genome-Wide Association Studies (GWAS -I)

  • Basics, genotype and phenotype data

  • Hapmap format

  • TASSEL software

January 24, 2023 (07:00 - 08:00 PM): Genome-Wide Association Studies (GWAS - II)

  • GWAS data analysis using GAPIT  R package,

  • Manhattan plot

  • qqplot generation. 

February 25, 2023 (07:00 - 08:00 PM): Microbiome Data Analysis -I

February 26, 2023 (07:00 - 08:00 PM): Microbiome Data Analysis -II

February 27, 2023 (07:00 - 08:00 PM):  RNA-Seq data analysis for Gene Expressions identification -I

February 28, 2023 (07:00 - 08:00 PM):  RNA-Seq data analysis for Gene Expressions identification -II

Scientists for this Workshop

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Dr. Shikha Mittal

Assistant Professor

Jaypee University of Information Technology, 

Solan, H.P., India

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Dr. Manish Datt

Associate Professor,

MIT-WPU School of Biology, Pune

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Dr. Surendra Vikram

PhD, CSIR-IMTECH,

CEO- Bionomics Research Lab, India

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Dr. Shailza Singh

Scientist - E, National Centre for Cell Science (NCCS), Pune, India

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Dr. Vipin Singh

PhD CCMB, Post Doc - IBENS (Click here)

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Dr. Madhumita

Postdoctoral research fellow, UNIKA-T, Germany

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Workshop Registration & Payment

After this form, please pay the fee to complete the registration process !!

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