This workshop is designed to provide hands-on training of different modules of Basic Bioinformatics (Linux System, Python, Biopython, and R), and all type of Next Generation Sequencing (NGS) analysis including including NGS data processing, Whole Genome Assembly, Genome Alignments, Variant calling, RNA-Seq data analysis, Metagenomics data and Microbiome data analysis.

This event is specially designed for the beginners in the field, and very useful for the students ans researchers already working in the field.  

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Who can participate: Students (B.Sc./B.Tech/M.Sc./M.Tech/MBBS), Research Fellows (Ph.D. students), Researchers (JRF/SRF/RA), Faculty, Scientists, and Company Personals. 

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Workshop Logistics 

 

Last date of registration: February 08, 2023.

Fee: Rs. 970/- for Indian Participants, $25 (USD) for International Participants.

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Prerequisite for the workshop

• Computer/Laptop with stable internet connection, and MIC.

• Basic knowledge of molecular biology.

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Certification and other highlights

• Participants must have access to the laptop/desktop with a stable internet connection. 

• Participants successfully completing the training will be provided with E-certificate.

• The entire training will be online and interactive (16-20 Hours).

• We will provide the full recordings of all the training sessions. 

• We will provide the link (e.g. Webex) to join the training sessions, one day before the event.

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Help and Support 

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support@nextgenhelper.com

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Workshop Timings (Indian Standard Time e.g. IST)

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February 10, 2023 (07:00 - 08:00 PM): How to setup your linux system to start bioinformatics work?

• Basics of Linux System

• Installation of Linux system

 

February 11, 2023 (07:00 - 08:00 PM): Basic Linux commands

• Basics linux commands to perform different operations

• Handling of files/data with shell commands

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February 12, 2023 (07:00 - 08:00 PM): Basics of 'R'

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February 13, 2023 (07:00 - 08:00 PM): File handling in 'R' and Graph preparation​

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February 14, 2023 (07:00 - 09:00 PM): Basics of Python​

• Introduction to Python and code editors

• Basic programming concepts

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February 15, 2023 (07:00 - 09:00 PM): Basics of Python

• Conditionals and loops

• File handling in Python

• Coding and data handling

 

February 16, 2023 (07:00 - 08:00 PM): Quality Control of Next Generation Sequencing (NGS) datasets

• Quality check of NGS datasets

• Understanding of NGS data quality and filtering 

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February 17, 2023 (07:00 - 08:00 PM): Whole Genome assembly with NGS datasets

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February 18, 2023 (07:00 - 08:00 PM): Metagenomics data analysis with NGS datasets

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February 19, 2023 (07:00 - 08:00 PM): You have to Practice, No live session

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February 20, 2023 (07:00 - 08:00 PM): NGS data analysis (Alignment & Variant Calling)- I

• SNP basics

• SNP identification using samtools

 

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February 21, 2023 (07:00 - 08:00 PM): NGS data analysis (Alignment & Variant Calling)- II

• SNP identification using freebayes

• Filtration and annotation of SNPs.

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February 22, 2023 (07:00 - 08:00 PM): You have to Practice, No live session.

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February 23, 2023 (07:00 - 08:00 PM): Genome-Wide Association Studies (GWAS -I)

• Basics, genotype and phenotype data

• Hapmap format

• TASSEL software​

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January 24, 2023 (07:00 - 08:00 PM): Genome-Wide Association Studies (GWAS - II)

• GWAS data analysis using GAPIT  R package,

• Manhattan plot

• qqplot generation. 

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February 25, 2023 (07:00 - 08:00 PM): Microbiome Data Analysis -I​

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February 26, 2023 (07:00 - 08:00 PM): Microbiome Data Analysis -II

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February 27, 2023 (07:00 - 08:00 PM):  RNA-Seq data analysis for Gene Expressions identification -I​

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​February 28, 2023 (07:00 - 08:00 PM):  RNA-Seq data analysis for Gene Expressions identification -II

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Scientists for this Workshop