Workshop 09/2022
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International workshop in the area of 
“Bioinformatics, Genomics, Text Mining and NGS data analysis"
September 12 - 30, 2022

In this internship, we will provide basics to advanced training of all the tools, techniques, and methodologies used by the scientists in their research. After this internship, participant will be perfectly ready to start Master's degree/PhD/Postdoctoral research in the area of Bioinformatics, Genomics, Big data analysis, Machine Learning, and other related techniques like Next Generation Sequencing data analysis. This internship programme will provide a platform for faculty and researchers to improve their skills by updating themselves with latest methodologies in the area. We will cover basics to advanced aspects of all the topics mentioned below.   

 

Who can participate: Students (B.Sc./B.Tech/M.Sc./M.Tech), Research Fellows (JRF/SRF/RA etc.), PhD students, Faculty, Scientists, and Company Personals. 

Internship Logistics 

Last date of registration: September 10, 2022

Fee: Rs. 900/- for Indian Participants, $25 (USD) for International Participants.

Timings: 07:00 PM - 08:00 PM Indian Standard Time (IST). Every session will be 60 minutes duration.

Certification and other highlights

  • Participants must have access to the laptop/desktop with a stable internet connection. 

  • Participants successfully completing the internship will be provided with E-certificate.

  • The entire internship will be online and interactive (~60 Hours).

  • We will provide the full recordings of all the internship sessions. 

  • We will provide the link (e.g. Webex) to join the training sessions, 

Help and Support 

support@nextgenhelper.com

Workshop Timings (Indian Standard Time e.g. IST)

September 12, 2022 (07:00 - 08:00 PM): Basic Linux commands

  • Start working on Linux System

  • Basic commands to play with data​​

 

September 13, 2022 (07:00 - 08:00 PM): Basics of Python.

  • Introduction to Python and code editors

  • Basic programming concepts

August 14, 2022: You have to Practice, No live session.

September 15, 2022 (07:00 - 08:00 PM): Data handling in Python, and Biopython

  • Bioinformatics with Python

  • Biopython Modules

September 16, 2022 (07:00 - 08:00 PM): Learn 'R' programming for beginners

  • Basics of 'R' and 'R studio'.

  • Installation of 'R' and 'R Studio

September 17, 2022 (07:00 - 08:00 PM): Data handling in R with R-Studio

  • Basic data/file handling in R.

August 18, 2022: You have to Practice, No live session.

September 19, 2022 (07:00 - 08:00 PM): Biomedical text mining - I

September 20, 2022 (07:00 - 08:00 PM): Biomedical text mining - II

September 21, 2022 (07:00 - 08:00 PM): Biomedical text mining - III

September 22, 2022 (07:00 - 08:00 PM): Biomedical text mining - IV

September 23, 2022 (07:00 - 08:00 PM): Quality Control of Next Generation Sequencing (NGS) datasets

  • Basics of NGS datasets, generation and Quality Score.

  • Data handling and Filtering of NGS datasets, trimming etc.

  • Training of tools to filter the NGS datasets.

September 24, 2022 (07:00 - 08:00 PM): Gene Expression analysis with RNA-Seq data

  • Basics of RNA-Seq

  • Data processing of RNA-seq

  • Gene expression identification, and further analysis

 

September 25, 2022: You have to Practice, No live session.

September 26, 2022 (07:00 - 08:00 PM): Gene Whole genome assembly with NGS datasets

  • Basics of Whole genome assembly

  • Demonstration of whole genome assembly with short reads

  • Quality assignment of whole genome assembly

September 27, 2022 (07:00 - 08:00 PM): Whole Genome Annotations, and Gene annotations

  • Gene prediction

  • Whole genome annotation with PROKKA pipeline for prokaryotic genomes

  • Assigning the functions to the predicted genes

September 28, 2022: You have to Practice, No live session.

September 29, 2022 (07:00 - 08:00 PM): NGS Data analysis with Galaxy tool - I

  • Basics of Galaxy tool

  • NGS data import/export, and analysis in GALAXY

September 30, 2022 (07:00 - 08:00 PM): NGS Data analysis with Galaxy tool - II

  • Advanced learning of data analysis in Galaxy tool

 

Scientists/Resource persons for this internship

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Dr. S. Ramachandran

Chief Scientist,

CSIR-Institute of Genomics and Integrative Biology, New Delhi

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Dr. Manish Datt

Bioinformatics Researcher and Educator, New Delhi

India.

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Dr. Surendra Vikram

PhD, CSIR-IMTECH,

CEO- Bionomics Research Lab, India

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Dr. Vipin Singh

Associate Professor, Biotechnology, Chandigarh University, India

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Dr. Shruti Kapoor

PhD, Postdoctoral Scientist,

University of Alabama,
Birmingham, AL, USA

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Workshop Registration & Payment

After this form, please pay the fee to complete the registration process !!